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Class: ExtractedString

An ExtractedValue whose value is text.

URI: neurostudy_ex:ExtractedString

 classDiagram
    class ExtractedString
    click ExtractedString href "../ExtractedString/"
      ExtractedValue <|-- ExtractedString
        click ExtractedValue href "../ExtractedValue/"

      ExtractedString : evidence





        ExtractedString --> "1" Evidence : evidence
        click Evidence href "../Evidence/"



      ExtractedString : extraction_status





        ExtractedString --> "1" ExtractionStatus : extraction_status
        click ExtractionStatus href "../ExtractionStatus/"



      ExtractedString : unreported_reason





        ExtractedString --> "0..1" UnreportedReason : unreported_reason
        click UnreportedReason href "../UnreportedReason/"



      ExtractedString : value

      ExtractedString : value_source





        ExtractedString --> "0..1" ValueSource : value_source
        click ValueSource href "../ValueSource/"



Inheritance

Slots

Name Cardinality and Range Description Inheritance
extraction_status 1
ExtractionStatus
ExtractedValue
value 0..1
String
Extracted or generated value ExtractedValue
value_source 0..1
ValueSource
ExtractedValue
unreported_reason 0..1
UnreportedReason
Why there is no value, where the reason is not the plain one ExtractedValue
evidence 1
Evidence
ExtractedValue

Usages

used by used in type used
StudyDesign description range ExtractedString
Arm name range ExtractedString
Arm description range ExtractedString
Arm agent range ExtractedString
Timepoint name range ExtractedString
Timepoint time_from_intervention range ExtractedString
Group name range ExtractedString
Group description range ExtractedString
Group recruitment_method range ExtractedString
Group recruitment_dates range ExtractedString
Group age_unit range ExtractedString
Group diagnostic_system range ExtractedString
Group clinical_characteristics range ExtractedString
Group medication_status range ExtractedString
Group education_summary range ExtractedString
Group socioeconomic_status_summary range ExtractedString
Group sample_source_reference range ExtractedString
Group age_unit_normalized range ExtractedString
CategoryDistribution category range ExtractedString
CategoryDistribution reporting_framework range ExtractedString
CategoryDistribution category_normalized range ExtractedString
Task name range ExtractedString
Task paradigm range ExtractedString
Task description range ExtractedString
Task presentation_software range ExtractedString
Task instructions range ExtractedString
TaskQualifier qualifier range ExtractedString
Condition name range ExtractedString
Condition description range ExtractedString
Assessment name range ExtractedString
Assessment description range ExtractedString
Assessment assessment_type range ExtractedString
Region name range ExtractedString
Region atlas range ExtractedString
Region description range ExtractedString
MRI pulse_sequence_type range ExtractedString
MRI mr_acquisition_type range ExtractedString
EEG eeg_reference range ExtractedString
EEG eeg_placement_scheme range ExtractedString
EEG recording_type range ExtractedString
FNIRS nirs_system_type range ExtractedString
PET image_units range ExtractedString
PET tracer_name range ExtractedString
PET tracer_radionuclide range ExtractedString
PET mode_of_administration range ExtractedString
PET scan_type range ExtractedString
OtherModality modality_label range ExtractedString
OtherModality reason_no_modality_class_used range ExtractedString
Device manufacturer range ExtractedString
Device model range ExtractedString
Analysis name range ExtractedString
Analysis definition range ExtractedString
Analysis source_table_analysis range ExtractedString
Analysis coordinate_space range ExtractedString
Analysis model_representation_notes range ExtractedString
Measure source_label range ExtractedString
Measure specific_metric range ExtractedString
Measure unit range ExtractedString
Cell level range ExtractedString
Cell label range ExtractedString
Preprocessing description range ExtractedString
ModelEstimation model_type range ExtractedString
ModelEstimation hrf_model range ExtractedString
ModelEstimation model_settings range ExtractedString
ModelEstimation stage range ExtractedString
ModelEstimation estimator range ExtractedString
ModelEstimation software range ExtractedString
ModelTerm name range ExtractedString
ModelTerm unit range ExtractedString
ModelTerm source_definition range ExtractedString
FactorLevel level range ExtractedString
InferenceSettings inference_level range ExtractedString
InferenceSettings height_threshold_type range ExtractedString
InferenceSettings multiple_comparison_method range ExtractedString
InferenceSettings search_volume range ExtractedString
InferenceSettings neighborhood_definition range ExtractedString
InferenceSettings tfce_parameters range ExtractedString
Table table_number range ExtractedString
Table title range ExtractedString
Table caption range ExtractedString
Table footer range ExtractedString
Table description range ExtractedString
CoordinateSet description range ExtractedString
Study description range ExtractedString
ExternalDataset name range ExtractedString
ExternalDataset url range ExtractedString
DecodingDetails decoded_variable range ExtractedString
DecodingDetails validation_scheme range ExtractedString
DecodingDetails generalization range ExtractedString
PerformanceMetric name range ExtractedString
DecodingClass label range ExtractedString
SimilarityDetails model range ExtractedString
SimilarityDetails neural_representation range ExtractedString
SimilarityDetails similarity_metric range ExtractedString
ConnectivityDetails modulatory_input range ExtractedString
ConjunctionComponent analysis_id range ExtractedString
ConjunctionComponent definition range ExtractedString
LatentDecompositionDetails component_id range ExtractedString
LatentDecompositionDetails component_label range ExtractedString
LatentDecompositionDetails dimensionality_selection_method range ExtractedString
LatentDecompositionDetails selection_criterion range ExtractedString
LatentDecompositionDetails salience_threshold range ExtractedString
OtherAnalysisDetails method_label range ExtractedString
OtherAnalysisDetails structured_details range ExtractedString
OtherAnalysisDetails reason_first_class_type_not_used range ExtractedString
NotStructurableDetails explanation range ExtractedString

Identifier and Mapping Information

Schema Source

  • from schema: https://neurostuff.org/schemas/neuroimaging-study-extraction

Mappings

Mapping Type Mapped Value
self neurostudy_ex:ExtractedString
native neurostudy_ex:ExtractedString

LinkML Source

Direct

name: ExtractedString
description: An ExtractedValue whose value is text.
from_schema: https://neurostuff.org/schemas/neuroimaging-study-extraction
rank: 1000
is_a: ExtractedValue
slot_usage:
  value:
    name: value
    range: string

Induced

name: ExtractedString
description: An ExtractedValue whose value is text.
from_schema: https://neurostuff.org/schemas/neuroimaging-study-extraction
rank: 1000
is_a: ExtractedValue
slot_usage:
  value:
    name: value
    range: string
attributes:
  extraction_status:
    name: extraction_status
    from_schema: https://neurostuff.org/schemas/extraction-evidence
    rank: 1000
    owner: ExtractedString
    domain_of:
    - ExtractedValue
    range: ExtractionStatus
    required: true
  value:
    name: value
    description: Extracted or generated value. Populate when extraction_status is
      extracted; omit when it is not_reported.
    from_schema: https://neurostuff.org/schemas/neuroimaging-study-extraction
    rank: 1000
    owner: ExtractedString
    domain_of:
    - ExtractedValue
    - PerformanceMetric
    range: string
  value_source:
    name: value_source
    from_schema: https://neurostuff.org/schemas/extraction-evidence
    rank: 1000
    owner: ExtractedString
    domain_of:
    - ExtractedValue
    range: ValueSource
  unreported_reason:
    name: unreported_reason
    description: 'Why there is no value, where the reason is not the plain one. Populate
      when extraction_status is not_reported and one of the four applies; omit when
      it is extracted, where there is nothing to explain. Absent is the ordinary case
      and claims nothing beyond the status: the attribute was examined and the source
      carries no value. Reading absence as "no pass looked" would contradict what
      `not_reported` already asserts, so nothing should.'
    from_schema: https://neurostuff.org/schemas/extraction-evidence
    rank: 1000
    owner: ExtractedString
    domain_of:
    - ExtractedValue
    range: UnreportedReason
  evidence:
    name: evidence
    from_schema: https://neurostuff.org/schemas/extraction-evidence
    rank: 1000
    owner: ExtractedString
    domain_of:
    - ExtractedValue
    range: Evidence
    required: true
    inlined: true