Class: Table

A publication table that supplies coordinates, statistics, or contextual metadata. Raw cell structure and point-level provenance may remain in the repository's coordinate-table representation and be linked with source_path.

URI: neurostudy_ex:Table

 classDiagram
    class Table
    click Table href "../Table/"
      Table : caption





        Table --> "0..1" ExtractedString : caption
        click ExtractedString href "../ExtractedString/"



      Table : column_headings





        Table --> "0..1" ExtractedStringList : column_headings
        click ExtractedStringList href "../ExtractedStringList/"



      Table : description





        Table --> "0..1" ExtractedString : description
        click ExtractedString href "../ExtractedString/"



      Table : footer





        Table --> "0..1" ExtractedString : footer
        click ExtractedString href "../ExtractedString/"



      Table : local_id

      Table : purpose





        Table --> "0..1" ExtractedTablePurpose : purpose
        click ExtractedTablePurpose href "../ExtractedTablePurpose/"



      Table : stable_id

      Table : table_number





        Table --> "0..1" ExtractedString : table_number
        click ExtractedString href "../ExtractedString/"



      Table : title





        Table --> "0..1" ExtractedString : title
        click ExtractedString href "../ExtractedString/"

Slots

Name	Cardinality and Range	Description	Inheritance
stable_id	0..1 String	UUID minted by the store the first time this entity appears, never by an extr...	direct
local_id	1 String	Stable table identifier used by Analysis foreign-key references	direct
table_number	0..1 ExtractedString	Printed identifier such as Table 2 or Supplementary Table S4	direct
title	0..1 ExtractedString	Table title, when distinct from the caption	direct
caption	0..1 ExtractedString	Table caption describing the table's contents	direct
footer	0..1 ExtractedString	Table notes, abbreviations, threshold statements, and footnotes	direct
column_headings	0..1 ExtractedStringList	Ordered leaf column headings retained to aid interpretation of extracted valu...	direct
description	0..1 ExtractedString	Summary of the table contents and its role in the reported analyses	direct
purpose	0..1 ExtractedTablePurpose	What this table is for	direct

Usages

used by	used in	type	used
Analysis	tables	range	Table
Study	tables	range	Table

Identifier and Mapping Information

Schema Source

• from schema: https://neurostuff.org/schemas/neuroimaging-study-extraction

Mappings

Mapping Type	Mapped Value
self	neurostudy_ex:Table
native	neurostudy_ex:Table

LinkML Source

Direct

name: Table
description: A publication table that supplies coordinates, statistics, or contextual
  metadata. Raw cell structure and point-level provenance may remain in the repository's
  coordinate-table representation and be linked with source_path.
from_schema: https://neurostuff.org/schemas/neuroimaging-study-extraction
rank: 1000
attributes:
  stable_id:
    name: stable_id
    description: UUID minted by the store the first time this entity appears, never
      by an extractor, and kept across re-runs so a later extraction matches the same
      entity.
    from_schema: https://neurostuff.org/schemas/neuroimaging-study-extraction/analysis
    domain_of:
    - Arm
    - Timepoint
    - Group
    - Task
    - Condition
    - Assessment
    - Region
    - Acquisition
    - Device
    - Analysis
    - Measure
    - Preprocessing
    - ModelEstimation
    - ModelTerm
    - InferenceSettings
    - Table
    - CoordinateSet
    - Study
    range: string
    pattern: ^[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}$
  local_id:
    name: local_id
    description: Stable table identifier used by Analysis foreign-key references.
    from_schema: https://neurostuff.org/schemas/neuroimaging-study-extraction/analysis
    identifier: true
    domain_of:
    - Arm
    - Timepoint
    - Group
    - Task
    - Condition
    - Assessment
    - Region
    - Acquisition
    - Device
    - Analysis
    - Measure
    - Preprocessing
    - ModelEstimation
    - ModelTerm
    - InferenceSettings
    - Table
    - CoordinateSet
    - Study
    range: string
    required: true
  table_number:
    name: table_number
    description: Printed identifier such as Table 2 or Supplementary Table S4.
    from_schema: https://neurostuff.org/schemas/neuroimaging-study-extraction/analysis
    rank: 1000
    domain_of:
    - Table
    range: ExtractedString
  title:
    name: title
    description: Table title, when distinct from the caption.
    from_schema: https://neurostuff.org/schemas/neuroimaging-study-extraction/analysis
    rank: 1000
    domain_of:
    - Table
    - PaperSection
    range: ExtractedString
  caption:
    name: caption
    description: Table caption describing the table's contents.
    from_schema: https://neurostuff.org/schemas/neuroimaging-study-extraction/analysis
    rank: 1000
    domain_of:
    - Table
    range: ExtractedString
  footer:
    name: footer
    description: Table notes, abbreviations, threshold statements, and footnotes.
    from_schema: https://neurostuff.org/schemas/neuroimaging-study-extraction/analysis
    rank: 1000
    domain_of:
    - Table
    range: ExtractedString
  column_headings:
    name: column_headings
    description: Ordered leaf column headings retained to aid interpretation of extracted
      values.
    from_schema: https://neurostuff.org/schemas/neuroimaging-study-extraction/analysis
    rank: 1000
    domain_of:
    - Table
    range: ExtractedStringList
  description:
    name: description
    description: Summary of the table contents and its role in the reported analyses.
    from_schema: https://neurostuff.org/schemas/neuroimaging-study-extraction/analysis
    domain_of:
    - StudyDesign
    - Arm
    - Group
    - Task
    - Condition
    - Assessment
    - Region
    - Preprocessing
    - Table
    - CoordinateSet
    - Study
    range: ExtractedString
  purpose:
    name: purpose
    description: 'What this table is for. `reported_effect` when its rows are the
      foci of a tested effect, which is the common case and which is derived from
      the analyses that name the table; otherwise what the rows are instead -- region
      or ROI definitions, atlas parcels, connectivity seeds, the peaks of a decomposition''s
      components, coordinates cited from other papers, a stimulus list, demographics,
      descriptive statistics with no test.

      A coordinate table is not an analysis merely by having coordinates in it, and
      this is the only field that says which it is. Absence means nothing decided:
      a table deliberately encoded as a non-analysis and one no pass considered are
      otherwise the same silence, and the coordinates of the first belong on the entity
      they locate (a Region''s description) rather than on a contrast that never produced
      them.

      A per-table answer, so it cannot be right for a table whose row groups serve
      different purposes -- results beside the ROIs they were tested in. Each row
      group states its own role in a `CoordinateSet`.'
    from_schema: https://neurostuff.org/schemas/neuroimaging-study-extraction/analysis
    rank: 1000
    domain_of:
    - Table
    range: ExtractedTablePurpose

Induced

name: Table
description: A publication table that supplies coordinates, statistics, or contextual
  metadata. Raw cell structure and point-level provenance may remain in the repository's
  coordinate-table representation and be linked with source_path.
from_schema: https://neurostuff.org/schemas/neuroimaging-study-extraction
rank: 1000
attributes:
  stable_id:
    name: stable_id
    description: UUID minted by the store the first time this entity appears, never
      by an extractor, and kept across re-runs so a later extraction matches the same
      entity.
    from_schema: https://neurostuff.org/schemas/neuroimaging-study-extraction/analysis
    owner: Table
    domain_of:
    - Arm
    - Timepoint
    - Group
    - Task
    - Condition
    - Assessment
    - Region
    - Acquisition
    - Device
    - Analysis
    - Measure
    - Preprocessing
    - ModelEstimation
    - ModelTerm
    - InferenceSettings
    - Table
    - CoordinateSet
    - Study
    range: string
    pattern: ^[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}$
  local_id:
    name: local_id
    description: Stable table identifier used by Analysis foreign-key references.
    from_schema: https://neurostuff.org/schemas/neuroimaging-study-extraction/analysis
    identifier: true
    owner: Table
    domain_of:
    - Arm
    - Timepoint
    - Group
    - Task
    - Condition
    - Assessment
    - Region
    - Acquisition
    - Device
    - Analysis
    - Measure
    - Preprocessing
    - ModelEstimation
    - ModelTerm
    - InferenceSettings
    - Table
    - CoordinateSet
    - Study
    range: string
    required: true
  table_number:
    name: table_number
    description: Printed identifier such as Table 2 or Supplementary Table S4.
    from_schema: https://neurostuff.org/schemas/neuroimaging-study-extraction/analysis
    rank: 1000
    owner: Table
    domain_of:
    - Table
    range: ExtractedString
  title:
    name: title
    description: Table title, when distinct from the caption.
    from_schema: https://neurostuff.org/schemas/neuroimaging-study-extraction/analysis
    rank: 1000
    owner: Table
    domain_of:
    - Table
    - PaperSection
    range: ExtractedString
  caption:
    name: caption
    description: Table caption describing the table's contents.
    from_schema: https://neurostuff.org/schemas/neuroimaging-study-extraction/analysis
    rank: 1000
    owner: Table
    domain_of:
    - Table
    range: ExtractedString
  footer:
    name: footer
    description: Table notes, abbreviations, threshold statements, and footnotes.
    from_schema: https://neurostuff.org/schemas/neuroimaging-study-extraction/analysis
    rank: 1000
    owner: Table
    domain_of:
    - Table
    range: ExtractedString
  column_headings:
    name: column_headings
    description: Ordered leaf column headings retained to aid interpretation of extracted
      values.
    from_schema: https://neurostuff.org/schemas/neuroimaging-study-extraction/analysis
    rank: 1000
    owner: Table
    domain_of:
    - Table
    range: ExtractedStringList
  description:
    name: description
    description: Summary of the table contents and its role in the reported analyses.
    from_schema: https://neurostuff.org/schemas/neuroimaging-study-extraction/analysis
    owner: Table
    domain_of:
    - StudyDesign
    - Arm
    - Group
    - Task
    - Condition
    - Assessment
    - Region
    - Preprocessing
    - Table
    - CoordinateSet
    - Study
    range: ExtractedString
  purpose:
    name: purpose
    description: 'What this table is for. `reported_effect` when its rows are the
      foci of a tested effect, which is the common case and which is derived from
      the analyses that name the table; otherwise what the rows are instead -- region
      or ROI definitions, atlas parcels, connectivity seeds, the peaks of a decomposition''s
      components, coordinates cited from other papers, a stimulus list, demographics,
      descriptive statistics with no test.

      A coordinate table is not an analysis merely by having coordinates in it, and
      this is the only field that says which it is. Absence means nothing decided:
      a table deliberately encoded as a non-analysis and one no pass considered are
      otherwise the same silence, and the coordinates of the first belong on the entity
      they locate (a Region''s description) rather than on a contrast that never produced
      them.

      A per-table answer, so it cannot be right for a table whose row groups serve
      different purposes -- results beside the ROIs they were tested in. Each row
      group states its own role in a `CoordinateSet`.'
    from_schema: https://neurostuff.org/schemas/neuroimaging-study-extraction/analysis
    rank: 1000
    owner: Table
    domain_of:
    - Table
    range: ExtractedTablePurpose