Class: ParsedPoint

One reported coordinate. coordinates, space and values are NIMADS's point fields with NIMADS's meaning, so the projection to a studyset copies them; everything else is the parse's own.

URI: parse:ParsedPoint

 classDiagram
    class ParsedPoint
    click ParsedPoint href "../ParsedPoint/"
      ParsedPoint : cluster_measure





        ParsedPoint --> "0..1" ClusterMeasure : cluster_measure
        click ClusterMeasure href "../ClusterMeasure/"



      ParsedPoint : cluster_size

      ParsedPoint : column_group

      ParsedPoint : coordinates

      ParsedPoint : is_subpeak

      ParsedPoint : label

      ParsedPoint : row

      ParsedPoint : space





        ParsedPoint --> "0..1" ReportedSpace : space
        click ReportedSpace href "../ReportedSpace/"



      ParsedPoint : text_span





        ParsedPoint --> "0..1" TextSpan : text_span
        click TextSpan href "../TextSpan/"



      ParsedPoint : values





        ParsedPoint --> "*" PointValue : values
        click PointValue href "../PointValue/"

Slots

Name	Cardinality and Range	Description	Inheritance
coordinates	1..* Float	x, y, z in millimetres	direct
space	0..1 ReportedSpace	Only when it differs from the analysis's coordinate_space	direct
row	0..1 Integer	For a table point, the TableRow it was read from	direct
column_group	0..1 Integer	For a table point, which block of coordinate columns it was read from, number...	direct
text_span	0..1 TextSpan	For a text point, the characters it was read from	direct
values	* PointValue	The values at the point	direct
cluster_size	0..1 Float		direct
cluster_measure	0..1 ClusterMeasure		direct
is_subpeak	0..1 Boolean		direct
label	0..1 String	The region name printed beside the point	direct

Usages

used by	used in	type	used
ParsedAnalysis	points	range	ParsedPoint

Identifier and Mapping Information

Schema Source

• from schema: https://neurostuff.org/schemas/neuroimaging-paper-parse

Mappings

Mapping Type	Mapped Value
self	parse:ParsedPoint
native	parse:ParsedPoint

LinkML Source

Direct

name: ParsedPoint
description: One reported coordinate. `coordinates`, `space` and `values` are NIMADS's
  point fields with NIMADS's meaning, so the projection to a studyset copies them;
  everything else is the parse's own.
from_schema: https://neurostuff.org/schemas/neuroimaging-paper-parse
rank: 1000
attributes:
  coordinates:
    name: coordinates
    description: x, y, z in millimetres.
    from_schema: https://neurostuff.org/schemas/neuroimaging-paper-parse/coordinates
    rank: 1000
    domain_of:
    - ParsedPoint
    range: float
    required: true
    multivalued: true
    minimum_cardinality: 3
    maximum_cardinality: 3
  space:
    name: space
    description: Only when it differs from the analysis's `coordinate_space`.
    from_schema: https://neurostuff.org/schemas/neuroimaging-paper-parse/coordinates
    rank: 1000
    domain_of:
    - ParsedPoint
    range: ReportedSpace
  row:
    name: row
    description: For a table point, the TableRow it was read from.
    from_schema: https://neurostuff.org/schemas/neuroimaging-paper-parse/coordinates
    domain_of:
    - TableRow
    - CellRef
    - ParsedPoint
    range: integer
    minimum_value: 0
  column_group:
    name: column_group
    description: For a table point, which block of coordinate columns it was read
      from, numbered from 0 left to right. 0 in a table with one block. Two contrasts
      printed side by side share rows and differ here.
    from_schema: https://neurostuff.org/schemas/neuroimaging-paper-parse/coordinates
    domain_of:
    - CellRef
    - ParsedPoint
    range: integer
    minimum_value: 0
  text_span:
    name: text_span
    description: For a text point, the characters it was read from.
    from_schema: https://neurostuff.org/schemas/neuroimaging-paper-parse/coordinates
    domain_of:
    - Citation
    - ParsedTable
    - TableRow
    - ParsedPoint
    - Threshold
    range: TextSpan
    inlined: true
  values:
    name: values
    description: 'The values at the point. They are the only record of its sign (StatisticKind
      gives the rule): a negative value makes it negative, and a point with only p,
      F or chi-square values, or none, is unsigned and takes the side of its analysis''s
      `split` half. On the inverse half the directional statistic values are negated
      so they read positive; p, F and chi-square stay as printed. `split` declares
      the inverse half, and a consumer records the inverse on the contrast''s conditions
      (negated weights), not per point. There is no point-level deactivation flag,
      and the parse never writes neurostore''s Point.deactivation.'
    from_schema: https://neurostuff.org/schemas/neuroimaging-paper-parse/coordinates
    rank: 1000
    domain_of:
    - ParsedPoint
    range: PointValue
    multivalued: true
    inlined_as_list: true
  cluster_size:
    name: cluster_size
    from_schema: https://neurostuff.org/schemas/neuroimaging-paper-parse/coordinates
    rank: 1000
    domain_of:
    - ParsedPoint
    range: float
    minimum_value: 0
  cluster_measure:
    name: cluster_measure
    from_schema: https://neurostuff.org/schemas/neuroimaging-paper-parse/coordinates
    rank: 1000
    domain_of:
    - ParsedPoint
    range: ClusterMeasure
  is_subpeak:
    name: is_subpeak
    from_schema: https://neurostuff.org/schemas/neuroimaging-paper-parse/coordinates
    rank: 1000
    domain_of:
    - ParsedPoint
    range: boolean
  label:
    name: label
    description: The region name printed beside the point.
    from_schema: https://neurostuff.org/schemas/neuroimaging-paper-parse/coordinates
    domain_of:
    - Reference
    - Supplement
    - ParsedTable
    - ParsedPoint
    range: string

Induced

name: ParsedPoint
description: One reported coordinate. `coordinates`, `space` and `values` are NIMADS's
  point fields with NIMADS's meaning, so the projection to a studyset copies them;
  everything else is the parse's own.
from_schema: https://neurostuff.org/schemas/neuroimaging-paper-parse
rank: 1000
attributes:
  coordinates:
    name: coordinates
    description: x, y, z in millimetres.
    from_schema: https://neurostuff.org/schemas/neuroimaging-paper-parse/coordinates
    rank: 1000
    owner: ParsedPoint
    domain_of:
    - ParsedPoint
    range: float
    required: true
    multivalued: true
    minimum_cardinality: 3
    maximum_cardinality: 3
  space:
    name: space
    description: Only when it differs from the analysis's `coordinate_space`.
    from_schema: https://neurostuff.org/schemas/neuroimaging-paper-parse/coordinates
    rank: 1000
    owner: ParsedPoint
    domain_of:
    - ParsedPoint
    range: ReportedSpace
  row:
    name: row
    description: For a table point, the TableRow it was read from.
    from_schema: https://neurostuff.org/schemas/neuroimaging-paper-parse/coordinates
    owner: ParsedPoint
    domain_of:
    - TableRow
    - CellRef
    - ParsedPoint
    range: integer
    minimum_value: 0
  column_group:
    name: column_group
    description: For a table point, which block of coordinate columns it was read
      from, numbered from 0 left to right. 0 in a table with one block. Two contrasts
      printed side by side share rows and differ here.
    from_schema: https://neurostuff.org/schemas/neuroimaging-paper-parse/coordinates
    owner: ParsedPoint
    domain_of:
    - CellRef
    - ParsedPoint
    range: integer
    minimum_value: 0
  text_span:
    name: text_span
    description: For a text point, the characters it was read from.
    from_schema: https://neurostuff.org/schemas/neuroimaging-paper-parse/coordinates
    owner: ParsedPoint
    domain_of:
    - Citation
    - ParsedTable
    - TableRow
    - ParsedPoint
    - Threshold
    range: TextSpan
    inlined: true
  values:
    name: values
    description: 'The values at the point. They are the only record of its sign (StatisticKind
      gives the rule): a negative value makes it negative, and a point with only p,
      F or chi-square values, or none, is unsigned and takes the side of its analysis''s
      `split` half. On the inverse half the directional statistic values are negated
      so they read positive; p, F and chi-square stay as printed. `split` declares
      the inverse half, and a consumer records the inverse on the contrast''s conditions
      (negated weights), not per point. There is no point-level deactivation flag,
      and the parse never writes neurostore''s Point.deactivation.'
    from_schema: https://neurostuff.org/schemas/neuroimaging-paper-parse/coordinates
    rank: 1000
    owner: ParsedPoint
    domain_of:
    - ParsedPoint
    range: PointValue
    multivalued: true
    inlined: true
    inlined_as_list: true
  cluster_size:
    name: cluster_size
    from_schema: https://neurostuff.org/schemas/neuroimaging-paper-parse/coordinates
    rank: 1000
    owner: ParsedPoint
    domain_of:
    - ParsedPoint
    range: float
    minimum_value: 0
  cluster_measure:
    name: cluster_measure
    from_schema: https://neurostuff.org/schemas/neuroimaging-paper-parse/coordinates
    rank: 1000
    owner: ParsedPoint
    domain_of:
    - ParsedPoint
    range: ClusterMeasure
  is_subpeak:
    name: is_subpeak
    from_schema: https://neurostuff.org/schemas/neuroimaging-paper-parse/coordinates
    rank: 1000
    owner: ParsedPoint
    domain_of:
    - ParsedPoint
    range: boolean
  label:
    name: label
    description: The region name printed beside the point.
    from_schema: https://neurostuff.org/schemas/neuroimaging-paper-parse/coordinates
    owner: ParsedPoint
    domain_of:
    - Reference
    - Supplement
    - ParsedTable
    - ParsedPoint
    range: string