Class: Table

A publication table that supplies coordinates, statistics, or contextual metadata. Raw cell structure and point-level provenance may remain in the repository's coordinate-table representation and be linked with source_path.

URI: neurostudy:Table

 classDiagram
    class Table
    click Table href "../Table/"
      Table : caption

      Table : column_headings

      Table : coordinate_count

      Table : coordinate_space

      Table : description

      Table : footer

      Table : id

      Table : purpose

      Table : source_path

      Table : table_number

      Table : title

Slots

Name	Cardinality and Range	Description	Inheritance
id	1 String	Stable table identifier used by Analysis foreign-key references	direct
table_number	0..1 String	Printed identifier such as Table 2 or Supplementary Table S4	direct
title	0..1 String	Table title, when distinct from the caption	direct
caption	0..1 String	Table caption describing the table's contents	direct
footer	0..1 String	Table notes, abbreviations, threshold statements, and footnotes	direct
source_path	0..1 String	Repository path or external location of the raw or normalized table represent...	direct
coordinate_space	0..1 String	Coordinate reference space applying to points in this table, from the tab...	direct
column_headings	* String	Ordered leaf column headings retained to aid interpretation of extracted valu...	direct
description	0..1 String	Summary of the table contents and its role in the reported analyses	direct
coordinate_count	0..1 Integer	Number of reported coordinate rows or points in the normalized table represen...	direct
purpose	0..1 String or  TablePurpose	What this table is for	direct

Usages

used by	used in	type	used
Analysis	tables	range	Table
CoordinateSet	table	range	Table
Study	tables	range	Table

Identifier and Mapping Information

Schema Source

• from schema: https://neurostuff.org/schemas/neuroimaging-study-storage

Mappings

Mapping Type	Mapped Value
self	neurostudy:Table
native	neurostudy:Table

LinkML Source

Direct

name: Table
description: A publication table that supplies coordinates, statistics, or contextual
  metadata. Raw cell structure and point-level provenance may remain in the repository's
  coordinate-table representation and be linked with source_path.
from_schema: https://neurostuff.org/schemas/neuroimaging-study-storage
rank: 1000
attributes:
  id:
    name: id
    description: Stable table identifier used by Analysis foreign-key references.
    in_subset:
    - mvp
    - deterministic
    from_schema: https://neurostuff.org/schemas/neuroimaging-study-storage/analysis
    identifier: true
    domain_of:
    - Arm
    - Timepoint
    - Group
    - Task
    - Condition
    - Assessment
    - Region
    - Acquisition
    - Device
    - Analysis
    - Measure
    - Preprocessing
    - ModelEstimation
    - ModelTerm
    - InferenceSettings
    - StatisticalMap
    - Table
    - CoordinateSet
    - Study
    range: string
    required: true
  table_number:
    name: table_number
    description: Printed identifier such as Table 2 or Supplementary Table S4.
    in_subset:
    - mvp
    - model_extracted
    from_schema: https://neurostuff.org/schemas/neuroimaging-study-storage/analysis
    rank: 1000
    domain_of:
    - Table
    range: string
  title:
    name: title
    description: Table title, when distinct from the caption.
    in_subset:
    - mvp
    - model_extracted
    from_schema: https://neurostuff.org/schemas/neuroimaging-study-storage/analysis
    rank: 1000
    domain_of:
    - Table
    - Bibliography
    range: string
  caption:
    name: caption
    description: Table caption describing the table's contents.
    in_subset:
    - mvp
    - model_extracted
    from_schema: https://neurostuff.org/schemas/neuroimaging-study-storage/analysis
    rank: 1000
    domain_of:
    - Table
    range: string
  footer:
    name: footer
    description: Table notes, abbreviations, threshold statements, and footnotes.
    in_subset:
    - mvp
    - model_extracted
    from_schema: https://neurostuff.org/schemas/neuroimaging-study-storage/analysis
    rank: 1000
    domain_of:
    - Table
    range: string
  source_path:
    name: source_path
    description: Repository path or external location of the raw or normalized table
      representation. Set by the ingestion pipeline.
    in_subset:
    - mvp
    - deterministic
    from_schema: https://neurostuff.org/schemas/neuroimaging-study-storage/analysis
    rank: 1000
    domain_of:
    - Table
    range: string
  coordinate_space:
    name: coordinate_space
    description: Coordinate reference space applying to points in **this table**,
      from the table parser. Per table, because one analysis's tables can be parsed
      in different spaces, and that disagreement is a fact about the tables worth
      keeping rather than one to resolve here. `Analysis.coordinate_space` is the
      space of the analysis and takes priority where the two differ.
    in_subset:
    - mvp
    - deterministic
    from_schema: https://neurostuff.org/schemas/neuroimaging-study-storage/analysis
    domain_of:
    - Analysis
    - StatisticalMap
    - Table
    range: string
  column_headings:
    name: column_headings
    description: Ordered leaf column headings retained to aid interpretation of extracted
      values.
    in_subset:
    - mvp
    - model_extracted
    from_schema: https://neurostuff.org/schemas/neuroimaging-study-storage/analysis
    rank: 1000
    domain_of:
    - Table
    range: string
    multivalued: true
  description:
    name: description
    description: Summary of the table contents and its role in the reported analyses.
    in_subset:
    - mvp
    - model_extracted
    from_schema: https://neurostuff.org/schemas/neuroimaging-study-storage/analysis
    domain_of:
    - StudyDesign
    - Arm
    - Group
    - Task
    - Condition
    - Assessment
    - Region
    - Preprocessing
    - StatisticalMap
    - Table
    - CoordinateSet
    - Study
    range: string
  coordinate_count:
    name: coordinate_count
    description: Number of reported coordinate rows or points in the normalized table
      representation.
    in_subset:
    - mvp
    - deterministic
    from_schema: https://neurostuff.org/schemas/neuroimaging-study-storage/analysis
    rank: 1000
    domain_of:
    - Table
    range: integer
    minimum_value: 0
  purpose:
    name: purpose
    description: 'What this table is for. `reported_effect` when its rows are the
      foci of a tested effect, which is the common case and which is derived from
      the analyses that name the table; otherwise what the rows are instead -- region
      or ROI definitions, atlas parcels, connectivity seeds, the peaks of a decomposition''s
      components, coordinates cited from other papers, a stimulus list, demographics,
      descriptive statistics with no test.

      A coordinate table is not an analysis merely by having coordinates in it, and
      this is the only field that says which it is. Absence means nothing decided:
      a table deliberately encoded as a non-analysis and one no pass considered are
      otherwise the same silence, and the coordinates of the first belong on the entity
      they locate (a Region''s description) rather than on a contrast that never produced
      them.

      A per-table answer, so it cannot be right for a table whose row groups serve
      different purposes -- results beside the ROIs they were tested in. Each row
      group states its own role in a `CoordinateSet`.'
    in_subset:
    - mvp
    - model_extracted
    from_schema: https://neurostuff.org/schemas/neuroimaging-study-storage/analysis
    rank: 1000
    domain_of:
    - Table
    any_of:
    - range: TablePurpose
    - range: string

Induced

name: Table
description: A publication table that supplies coordinates, statistics, or contextual
  metadata. Raw cell structure and point-level provenance may remain in the repository's
  coordinate-table representation and be linked with source_path.
from_schema: https://neurostuff.org/schemas/neuroimaging-study-storage
rank: 1000
attributes:
  id:
    name: id
    description: Stable table identifier used by Analysis foreign-key references.
    in_subset:
    - mvp
    - deterministic
    from_schema: https://neurostuff.org/schemas/neuroimaging-study-storage/analysis
    identifier: true
    owner: Table
    domain_of:
    - Arm
    - Timepoint
    - Group
    - Task
    - Condition
    - Assessment
    - Region
    - Acquisition
    - Device
    - Analysis
    - Measure
    - Preprocessing
    - ModelEstimation
    - ModelTerm
    - InferenceSettings
    - StatisticalMap
    - Table
    - CoordinateSet
    - Study
    range: string
    required: true
  table_number:
    name: table_number
    description: Printed identifier such as Table 2 or Supplementary Table S4.
    in_subset:
    - mvp
    - model_extracted
    from_schema: https://neurostuff.org/schemas/neuroimaging-study-storage/analysis
    rank: 1000
    owner: Table
    domain_of:
    - Table
    range: string
  title:
    name: title
    description: Table title, when distinct from the caption.
    in_subset:
    - mvp
    - model_extracted
    from_schema: https://neurostuff.org/schemas/neuroimaging-study-storage/analysis
    rank: 1000
    owner: Table
    domain_of:
    - Table
    - Bibliography
    range: string
  caption:
    name: caption
    description: Table caption describing the table's contents.
    in_subset:
    - mvp
    - model_extracted
    from_schema: https://neurostuff.org/schemas/neuroimaging-study-storage/analysis
    rank: 1000
    owner: Table
    domain_of:
    - Table
    range: string
  footer:
    name: footer
    description: Table notes, abbreviations, threshold statements, and footnotes.
    in_subset:
    - mvp
    - model_extracted
    from_schema: https://neurostuff.org/schemas/neuroimaging-study-storage/analysis
    rank: 1000
    owner: Table
    domain_of:
    - Table
    range: string
  source_path:
    name: source_path
    description: Repository path or external location of the raw or normalized table
      representation. Set by the ingestion pipeline.
    in_subset:
    - mvp
    - deterministic
    from_schema: https://neurostuff.org/schemas/neuroimaging-study-storage/analysis
    rank: 1000
    owner: Table
    domain_of:
    - Table
    range: string
  coordinate_space:
    name: coordinate_space
    description: Coordinate reference space applying to points in **this table**,
      from the table parser. Per table, because one analysis's tables can be parsed
      in different spaces, and that disagreement is a fact about the tables worth
      keeping rather than one to resolve here. `Analysis.coordinate_space` is the
      space of the analysis and takes priority where the two differ.
    in_subset:
    - mvp
    - deterministic
    from_schema: https://neurostuff.org/schemas/neuroimaging-study-storage/analysis
    owner: Table
    domain_of:
    - Analysis
    - StatisticalMap
    - Table
    range: string
  column_headings:
    name: column_headings
    description: Ordered leaf column headings retained to aid interpretation of extracted
      values.
    in_subset:
    - mvp
    - model_extracted
    from_schema: https://neurostuff.org/schemas/neuroimaging-study-storage/analysis
    rank: 1000
    owner: Table
    domain_of:
    - Table
    range: string
    multivalued: true
  description:
    name: description
    description: Summary of the table contents and its role in the reported analyses.
    in_subset:
    - mvp
    - model_extracted
    from_schema: https://neurostuff.org/schemas/neuroimaging-study-storage/analysis
    owner: Table
    domain_of:
    - StudyDesign
    - Arm
    - Group
    - Task
    - Condition
    - Assessment
    - Region
    - Preprocessing
    - StatisticalMap
    - Table
    - CoordinateSet
    - Study
    range: string
  coordinate_count:
    name: coordinate_count
    description: Number of reported coordinate rows or points in the normalized table
      representation.
    in_subset:
    - mvp
    - deterministic
    from_schema: https://neurostuff.org/schemas/neuroimaging-study-storage/analysis
    rank: 1000
    owner: Table
    domain_of:
    - Table
    range: integer
    minimum_value: 0
  purpose:
    name: purpose
    description: 'What this table is for. `reported_effect` when its rows are the
      foci of a tested effect, which is the common case and which is derived from
      the analyses that name the table; otherwise what the rows are instead -- region
      or ROI definitions, atlas parcels, connectivity seeds, the peaks of a decomposition''s
      components, coordinates cited from other papers, a stimulus list, demographics,
      descriptive statistics with no test.

      A coordinate table is not an analysis merely by having coordinates in it, and
      this is the only field that says which it is. Absence means nothing decided:
      a table deliberately encoded as a non-analysis and one no pass considered are
      otherwise the same silence, and the coordinates of the first belong on the entity
      they locate (a Region''s description) rather than on a contrast that never produced
      them.

      A per-table answer, so it cannot be right for a table whose row groups serve
      different purposes -- results beside the ROIs they were tested in. Each row
      group states its own role in a `CoordinateSet`.'
    in_subset:
    - mvp
    - model_extracted
    from_schema: https://neurostuff.org/schemas/neuroimaging-study-storage/analysis
    rank: 1000
    owner: Table
    domain_of:
    - Table
    range: string
    any_of:
    - range: TablePurpose
    - range: string