Class: ExtractedSpecies

An ExtractedValue whose value is Species, or the source's own wording when the vocabulary does not cover it.

URI: neurostudy_ex:ExtractedSpecies

 classDiagram
    class ExtractedSpecies
    click ExtractedSpecies href "../ExtractedSpecies/"
      ExtractedValue <|-- ExtractedSpecies
        click ExtractedValue href "../ExtractedValue/"

      ExtractedSpecies : evidence





        ExtractedSpecies --> "1" Evidence : evidence
        click Evidence href "../Evidence/"



      ExtractedSpecies : extraction_status





        ExtractedSpecies --> "1" ExtractionStatus : extraction_status
        click ExtractionStatus href "../ExtractionStatus/"



      ExtractedSpecies : unreported_reason





        ExtractedSpecies --> "0..1" UnreportedReason : unreported_reason
        click UnreportedReason href "../UnreportedReason/"



      ExtractedSpecies : value





        ExtractedSpecies --> "0..1"  : value
        click  href "NONE"



      ExtractedSpecies : value_source





        ExtractedSpecies --> "0..1" ValueSource : value_source
        click ValueSource href "../ValueSource/"

Inheritance

• ExtractedValue
  • ExtractedSpecies

Slots

Name	Cardinality and Range	Description	Inheritance
extraction_status	1 ExtractionStatus		ExtractedValue
value	0..1 NONE or  Species or  String	Extracted or generated value	ExtractedValue
value_source	0..1 ValueSource		ExtractedValue
unreported_reason	0..1 UnreportedReason	Why there is no value, where the reason is not the plain one	ExtractedValue
evidence	1 Evidence		ExtractedValue

Usages

used by	used in	type	used
Group	species	range	ExtractedSpecies

Identifier and Mapping Information

Schema Source

• from schema: https://neurostuff.org/schemas/neuroimaging-study-extraction

Mappings

Mapping Type	Mapped Value
self	neurostudy_ex:ExtractedSpecies
native	neurostudy_ex:ExtractedSpecies

LinkML Source

Direct

name: ExtractedSpecies
description: An ExtractedValue whose value is Species, or the source's own wording
  when the vocabulary does not cover it.
from_schema: https://neurostuff.org/schemas/neuroimaging-study-extraction
rank: 1000
is_a: ExtractedValue
slot_usage:
  value:
    name: value
    any_of:
    - range: Species
    - range: string

Induced

name: ExtractedSpecies
description: An ExtractedValue whose value is Species, or the source's own wording
  when the vocabulary does not cover it.
from_schema: https://neurostuff.org/schemas/neuroimaging-study-extraction
rank: 1000
is_a: ExtractedValue
slot_usage:
  value:
    name: value
    any_of:
    - range: Species
    - range: string
attributes:
  extraction_status:
    name: extraction_status
    from_schema: https://neurostuff.org/schemas/extraction-evidence
    rank: 1000
    owner: ExtractedSpecies
    domain_of:
    - ExtractedValue
    range: ExtractionStatus
    required: true
  value:
    name: value
    description: Extracted or generated value. Populate when extraction_status is
      extracted; omit when it is not_reported.
    from_schema: https://neurostuff.org/schemas/neuroimaging-study-extraction
    rank: 1000
    owner: ExtractedSpecies
    domain_of:
    - ExtractedValue
    - PerformanceMetric
    range: Any
    any_of:
    - range: Species
    - range: string
  value_source:
    name: value_source
    from_schema: https://neurostuff.org/schemas/extraction-evidence
    rank: 1000
    owner: ExtractedSpecies
    domain_of:
    - ExtractedValue
    range: ValueSource
  unreported_reason:
    name: unreported_reason
    description: 'Why there is no value, where the reason is not the plain one. Populate
      when extraction_status is not_reported and one of the four applies; omit when
      it is extracted, where there is nothing to explain. Absent is the ordinary case
      and claims nothing beyond the status: the attribute was examined and the source
      carries no value. Reading absence as "no pass looked" would contradict what
      `not_reported` already asserts, so nothing should.'
    from_schema: https://neurostuff.org/schemas/extraction-evidence
    rank: 1000
    owner: ExtractedSpecies
    domain_of:
    - ExtractedValue
    range: UnreportedReason
  evidence:
    name: evidence
    from_schema: https://neurostuff.org/schemas/extraction-evidence
    rank: 1000
    owner: ExtractedSpecies
    domain_of:
    - ExtractedValue
    range: Evidence
    required: true
    inlined: true