Class: Threshold

_One threshold an analysis's results survived. Maps onto the storage schema's InferenceSettings: a height threshold is height_threshold_value and type, a cluster_extent is cluster_extent_threshold, a cluster_level is clusterwise_threshold_value, tfce sets tfce_used; correction is multiple_comparison_method at that level.

URI: parse:Threshold

 classDiagram
    class Threshold
    click Threshold href "../Threshold/"
      Threshold : correction

      Threshold : level





        Threshold --> "1" ThresholdLevel : level
        click ThresholdLevel href "../ThresholdLevel/"



      Threshold : quantity





        Threshold --> "1" ThresholdQuantity : quantity
        click ThresholdQuantity href "../ThresholdQuantity/"



      Threshold : scope_as_printed

      Threshold : text_span





        Threshold --> "0..1" TextSpan : text_span
        click TextSpan href "../TextSpan/"



      Threshold : value

Slots

Name	Cardinality and Range	Description	Inheritance
level	1 ThresholdLevel		direct
quantity	1 ThresholdQuantity	What value is measured in	direct
value	0..1 Float	Absent when the paper names the correction but not the number	direct
correction	0..1 String or  CorrectionMethod		direct
scope_as_printed	0..1 String	What the correction ran over, as printed, such as "whole brain" or "within th...	direct
text_span	0..1 TextSpan	Where the threshold was read	direct

Usages

used by	used in	type	used
ParsedAnalysis	thresholds	range	Threshold

Identifier and Mapping Information

Schema Source

• from schema: https://neurostuff.org/schemas/neuroimaging-paper-parse

Mappings

Mapping Type	Mapped Value
self	parse:Threshold
native	parse:Threshold

LinkML Source

Direct

name: Threshold
description: 'One threshold an analysis''s results survived. Maps onto the storage
  schema''s InferenceSettings: a `height` threshold is height_threshold_value and
  _type, a `cluster_extent` is cluster_extent_threshold, a `cluster_level` is clusterwise_threshold_value,
  `tfce` sets tfce_used; `correction` is multiple_comparison_method at that level.'
from_schema: https://neurostuff.org/schemas/neuroimaging-paper-parse
rank: 1000
attributes:
  level:
    name: level
    from_schema: https://neurostuff.org/schemas/neuroimaging-paper-parse/coordinates
    domain_of:
    - PointValue
    - Threshold
    range: ThresholdLevel
    required: true
  quantity:
    name: quantity
    description: What `value` is measured in.
    from_schema: https://neurostuff.org/schemas/neuroimaging-paper-parse/coordinates
    rank: 1000
    domain_of:
    - Threshold
    range: ThresholdQuantity
    required: true
  value:
    name: value
    description: Absent when the paper names the correction but not the number.
    from_schema: https://neurostuff.org/schemas/neuroimaging-paper-parse/coordinates
    domain_of:
    - PointValue
    - Threshold
    range: float
  correction:
    name: correction
    from_schema: https://neurostuff.org/schemas/neuroimaging-paper-parse/coordinates
    domain_of:
    - PointValue
    - Threshold
    any_of:
    - range: CorrectionMethod
    - range: string
  scope_as_printed:
    name: scope_as_printed
    description: What the correction ran over, as printed, such as "whole brain" or
      "within the amygdala mask".
    from_schema: https://neurostuff.org/schemas/neuroimaging-paper-parse/coordinates
    rank: 1000
    domain_of:
    - Threshold
    range: string
  text_span:
    name: text_span
    description: Where the threshold was read.
    from_schema: https://neurostuff.org/schemas/neuroimaging-paper-parse/coordinates
    domain_of:
    - Citation
    - ParsedTable
    - TableRow
    - ParsedPoint
    - Threshold
    range: TextSpan
    inlined: true

Induced

name: Threshold
description: 'One threshold an analysis''s results survived. Maps onto the storage
  schema''s InferenceSettings: a `height` threshold is height_threshold_value and
  _type, a `cluster_extent` is cluster_extent_threshold, a `cluster_level` is clusterwise_threshold_value,
  `tfce` sets tfce_used; `correction` is multiple_comparison_method at that level.'
from_schema: https://neurostuff.org/schemas/neuroimaging-paper-parse
rank: 1000
attributes:
  level:
    name: level
    from_schema: https://neurostuff.org/schemas/neuroimaging-paper-parse/coordinates
    owner: Threshold
    domain_of:
    - PointValue
    - Threshold
    range: ThresholdLevel
    required: true
  quantity:
    name: quantity
    description: What `value` is measured in.
    from_schema: https://neurostuff.org/schemas/neuroimaging-paper-parse/coordinates
    rank: 1000
    owner: Threshold
    domain_of:
    - Threshold
    range: ThresholdQuantity
    required: true
  value:
    name: value
    description: Absent when the paper names the correction but not the number.
    from_schema: https://neurostuff.org/schemas/neuroimaging-paper-parse/coordinates
    owner: Threshold
    domain_of:
    - PointValue
    - Threshold
    range: float
  correction:
    name: correction
    from_schema: https://neurostuff.org/schemas/neuroimaging-paper-parse/coordinates
    owner: Threshold
    domain_of:
    - PointValue
    - Threshold
    range: string
    any_of:
    - range: CorrectionMethod
    - range: string
  scope_as_printed:
    name: scope_as_printed
    description: What the correction ran over, as printed, such as "whole brain" or
      "within the amygdala mask".
    from_schema: https://neurostuff.org/schemas/neuroimaging-paper-parse/coordinates
    rank: 1000
    owner: Threshold
    domain_of:
    - Threshold
    range: string
  text_span:
    name: text_span
    description: Where the threshold was read.
    from_schema: https://neurostuff.org/schemas/neuroimaging-paper-parse/coordinates
    owner: Threshold
    domain_of:
    - Citation
    - ParsedTable
    - TableRow
    - ParsedPoint
    - Threshold
    range: TextSpan
    inlined: true