Class: ArticleIdentifiers

Every identifier known for the paper when the artifact was written. Carried whole, so no consumer has to choose between them or look one up. doi, pmid and pmcid name the version of record; a preprint's identifiers are kept beside them in the preprint_ fields, so a paper and its preprint are one article.

URI: parse:ArticleIdentifiers

 classDiagram
    class ArticleIdentifiers
    click ArticleIdentifiers href "../ArticleIdentifiers/"
      ArticleIdentifiers : doi

      ArticleIdentifiers : pmcid

      ArticleIdentifiers : pmid

      ArticleIdentifiers : preprint_dois





        ArticleIdentifiers --> "*" PreprintDoi : preprint_dois
        click PreprintDoi href "../PreprintDoi/"



      ArticleIdentifiers : preprint_pmcid

      ArticleIdentifiers : preprint_pmid

      ArticleIdentifiers : publication_status





        ArticleIdentifiers --> "1" PublicationStatus : publication_status
        click PublicationStatus href "../PublicationStatus/"

Slots

Name	Cardinality and Range	Description	Inheritance
pmid	0..1 String	PubMed's record of the version of record	direct
pmcid	0..1 String	PubMed Central's copy of the version of record	direct
doi	0..1 String	The DOI of the version of record	direct
preprint_dois	* PreprintDoi	Every DOI a preprint server registered for the paper	direct
preprint_pmid	0..1 String	PubMed's record of the preprint, which PubMed types Preprint	direct
preprint_pmcid	0..1 String	PubMed Central's copy of the preprint	direct
publication_status	1 PublicationStatus	preprint when a preprint_ field is set and doi, pmid and pmcid are ...	direct

Usages

used by	used in	type	used
ArtifactHeader	identifiers	range	ArticleIdentifiers

Identifier and Mapping Information

Schema Source

• from schema: https://neurostuff.org/schemas/neuroimaging-paper-parse

Mappings

Mapping Type	Mapped Value
self	parse:ArticleIdentifiers
native	parse:ArticleIdentifiers

LinkML Source

Direct

name: ArticleIdentifiers
description: Every identifier known for the paper when the artifact was written. Carried
  whole, so no consumer has to choose between them or look one up. `doi`, `pmid` and
  `pmcid` name the version of record; a preprint's identifiers are kept beside them
  in the `preprint_` fields, so a paper and its preprint are one article.
from_schema: https://neurostuff.org/schemas/neuroimaging-paper-parse
rank: 1000
attributes:
  pmid:
    name: pmid
    description: PubMed's record of the version of record. Never PubMed's record of
      a preprint, which is `preprint_pmid`.
    in_subset:
    - mvp
    - deterministic
    from_schema: https://neurostuff.org/schemas/neuroimaging-study-storage/bibliography
    rank: 1000
    domain_of:
    - ArticleIdentifiers
    - Correction
    - Reference
    range: string
  pmcid:
    name: pmcid
    description: PubMed Central's copy of the version of record. Never PMC's copy
      of a preprint, which is `preprint_pmcid`.
    in_subset:
    - mvp
    - deterministic
    from_schema: https://neurostuff.org/schemas/neuroimaging-study-storage/bibliography
    rank: 1000
    domain_of:
    - ArticleIdentifiers
    range: string
  doi:
    name: doi
    description: The DOI of the version of record. Never a preprint server's DOI,
      which is in `preprint_dois`.
    in_subset:
    - mvp
    - deterministic
    from_schema: https://neurostuff.org/schemas/neuroimaging-study-storage/bibliography
    rank: 1000
    domain_of:
    - ArticleIdentifiers
    - PreprintDoi
    - Correction
    - Reference
    range: string
  preprint_dois:
    name: preprint_dois
    description: Every DOI a preprint server registered for the paper. A server that
      registers each version separately, such as Research Square's `/v2`, gives one
      entry per version, each kept as registered.
    in_subset:
    - mvp
    - deterministic
    from_schema: https://neurostuff.org/schemas/neuroimaging-study-storage/bibliography
    rank: 1000
    domain_of:
    - ArticleIdentifiers
    range: PreprintDoi
    multivalued: true
    inlined_as_list: true
  preprint_pmid:
    name: preprint_pmid
    description: PubMed's record of the preprint, which PubMed types `Preprint`.
    in_subset:
    - mvp
    - deterministic
    from_schema: https://neurostuff.org/schemas/neuroimaging-study-storage/bibliography
    rank: 1000
    domain_of:
    - ArticleIdentifiers
    range: string
  preprint_pmcid:
    name: preprint_pmcid
    description: PubMed Central's copy of the preprint.
    in_subset:
    - mvp
    - deterministic
    from_schema: https://neurostuff.org/schemas/neuroimaging-study-storage/bibliography
    rank: 1000
    domain_of:
    - ArticleIdentifiers
    range: string
  publication_status:
    name: publication_status
    description: '`preprint` when a `preprint_` field is set and `doi`, `pmid` and
      `pmcid` are all empty, `published` otherwise. The producer states it so that
      no consumer re-derives it.'
    in_subset:
    - mvp
    - deterministic
    from_schema: https://neurostuff.org/schemas/neuroimaging-study-storage/bibliography
    rank: 1000
    domain_of:
    - ArticleIdentifiers
    range: PublicationStatus
    required: true

Induced

name: ArticleIdentifiers
description: Every identifier known for the paper when the artifact was written. Carried
  whole, so no consumer has to choose between them or look one up. `doi`, `pmid` and
  `pmcid` name the version of record; a preprint's identifiers are kept beside them
  in the `preprint_` fields, so a paper and its preprint are one article.
from_schema: https://neurostuff.org/schemas/neuroimaging-paper-parse
rank: 1000
attributes:
  pmid:
    name: pmid
    description: PubMed's record of the version of record. Never PubMed's record of
      a preprint, which is `preprint_pmid`.
    in_subset:
    - mvp
    - deterministic
    from_schema: https://neurostuff.org/schemas/neuroimaging-study-storage/bibliography
    rank: 1000
    owner: ArticleIdentifiers
    domain_of:
    - ArticleIdentifiers
    - Correction
    - Reference
    range: string
  pmcid:
    name: pmcid
    description: PubMed Central's copy of the version of record. Never PMC's copy
      of a preprint, which is `preprint_pmcid`.
    in_subset:
    - mvp
    - deterministic
    from_schema: https://neurostuff.org/schemas/neuroimaging-study-storage/bibliography
    rank: 1000
    owner: ArticleIdentifiers
    domain_of:
    - ArticleIdentifiers
    range: string
  doi:
    name: doi
    description: The DOI of the version of record. Never a preprint server's DOI,
      which is in `preprint_dois`.
    in_subset:
    - mvp
    - deterministic
    from_schema: https://neurostuff.org/schemas/neuroimaging-study-storage/bibliography
    rank: 1000
    owner: ArticleIdentifiers
    domain_of:
    - ArticleIdentifiers
    - PreprintDoi
    - Correction
    - Reference
    range: string
  preprint_dois:
    name: preprint_dois
    description: Every DOI a preprint server registered for the paper. A server that
      registers each version separately, such as Research Square's `/v2`, gives one
      entry per version, each kept as registered.
    in_subset:
    - mvp
    - deterministic
    from_schema: https://neurostuff.org/schemas/neuroimaging-study-storage/bibliography
    rank: 1000
    owner: ArticleIdentifiers
    domain_of:
    - ArticleIdentifiers
    range: PreprintDoi
    multivalued: true
    inlined: true
    inlined_as_list: true
  preprint_pmid:
    name: preprint_pmid
    description: PubMed's record of the preprint, which PubMed types `Preprint`.
    in_subset:
    - mvp
    - deterministic
    from_schema: https://neurostuff.org/schemas/neuroimaging-study-storage/bibliography
    rank: 1000
    owner: ArticleIdentifiers
    domain_of:
    - ArticleIdentifiers
    range: string
  preprint_pmcid:
    name: preprint_pmcid
    description: PubMed Central's copy of the preprint.
    in_subset:
    - mvp
    - deterministic
    from_schema: https://neurostuff.org/schemas/neuroimaging-study-storage/bibliography
    rank: 1000
    owner: ArticleIdentifiers
    domain_of:
    - ArticleIdentifiers
    range: string
  publication_status:
    name: publication_status
    description: '`preprint` when a `preprint_` field is set and `doi`, `pmid` and
      `pmcid` are all empty, `published` otherwise. The producer states it so that
      no consumer re-derives it.'
    in_subset:
    - mvp
    - deterministic
    from_schema: https://neurostuff.org/schemas/neuroimaging-study-storage/bibliography
    rank: 1000
    owner: ArticleIdentifiers
    domain_of:
    - ArticleIdentifiers
    range: PublicationStatus
    required: true